stageR - stageR: stage-wise analysis of high throughput gene expression data in R
The stageR package allows automated stage-wise analysis of high-throughput gene expression data. The method is published in Genome Biology at https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1277-0
Last updated 4 months ago
softwarestatisticalmethod
1.69 score 28 dependenciestraviz - Trajectory functions for visualization and interpretation.
traviz provides a suite of functions to plot trajectory related objects from Bioconductor packages. It allows plotting trajectories in reduced dimension, as well as averge gene expression smoothers as a function of pseudotime. Asides from general utility functions, traviz also allows plotting trajectories estimated by Slingshot, as well as smoothers estimated by tradeSeq. Furthermore, it allows for visualization of Slingshot trajectories using ggplot2.
Last updated 4 months ago
geneexpressionrnaseqsequencingsoftwaresinglecelltranscriptomicsvisualization
0.09 score 83 dependencies